image analysis for neuroscience

Voxelytics Align

Pre-process large-scale 3D microscopy datasets with Voxelytics Align: Alignment, Stitching, and Normalization.
Optimized for Connectomics-scale 3D EM datasets.Highly parallelized, ready for compute clusters.

After
Before

* Image acquisition by Carles Bosch, Francis Crick Institute

Alignment & Registration

Automatically align large-scale 3D microscopy image stacks with Voxelytics Align in order to facilitate automated and manual analysis of your dataset.
Optimized for processing speed taking advantage of modern manycore processors. Large-scale alignment jobs are distributed across your data center.

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    Efficient global alignment with RANSAC
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    Pairwise SIFT, SURF, and ORB feature matching
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    Robust outlier handling 

In-Plane Stitching & Normalization


Easily combine individual image tiles produced by your microscope into a single plane. Overlapping regions are stitched together with smart outlier rejection. Easy-to-use and robust for many datasets.
Globally normalize contrasts across the dataset to significantly improve the quality of all subsequent image analysis steps.

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    Dynamic mesh transformation for fine alignment
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    Pairwise SIFT, SURF, and ORB feature matching
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    Histogram-based contrast normalization


* Image acquisition by Carles Bosch, Francis Crick Institute

Illustration

HPC and Cloud Ready

Large 3D image datasets can easily grow to terabytes or petabytes of data and demand intensive compute resources. Our segmentation tools are highly optimized to run all operations in parallel to minimize compute times.

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    HPC and Cloud Ready
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    Highly parallelized across manycore and GPU systems
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    Distributed computing with SLURM, PBS or other schedulers

Pricing

Our image alignment solutions get you started with data reconstruction today. 

Workstation License


Price Upon Request

  • Individual license for use on a single desktop computer 
  • Multi-Core Parallelism
  • Runs On-Premise on your Machine
  • Includes 3D Image Alignment, 2D Stitching, and Normalization
  • Automatic Updates
  • Email Support
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Alignment as a Service

From €5,000per dataset*

  • Managed Servicefrom raw images to an aligned dataset
  • On-Premise in your data center or in the cloud
  • Custom Solutions & Trial Available
  • Automatic Updates
  • Slack & Email Support
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Cluster License


Price Upon Request

  • Cluster license for use on a whole compute cluster
  • Multi-Core Parallelism &Distributed Computing
  • Runs On-Premise on your Machine & Data Center
  • Automatic Updates
  • Email Support
GET IN TOUCH
  • Quantum CEO & our partners
  • Quantum CEO & our partners
  • Quantum CEO & our partners

Looking for Automated AI Image Segmentation?

Alignment, stitching, and normalization are typically only the first steps for reconstructing microscopy datasets.
With Voxelytics Connect we offer a fully optimized machine learning solution for image segmentation for neurons and synapse detection.
Learn more

Want to work with us?

Learn how you can apply Voxelytics to your data.