Automated Connectomics
Automated Connectome and neuron reconstructions.Our tools and services turn raw microscopy images to higher-level circuit analysis.
Based on years of experience and developed in close collaboration with our scientific partners.
Tools and Services for repeatable Connectomics
scalable minds' deep learning AI platform Voxelytics enables an automated reliable reconstruction of neural connections from raw EM data over segmented neurons to finished Connectome matrices.
Our services offer an accessible and repeatable process for neuron reconstruction and synapse detection using state-of-the-art Machine Learning algorithms. We collaborate closely with your group in order to get the most out of your data.
We offer WEBKNOSSOS as an easy-to-use collaboration tool for terabyte-scale 3D datasets. Easily and safely share datasets with the team and external collaborators. Annotate skeletons or volumes using efficient manual tools. Explore and review automatic analysis results.
Examples
Dense neuron segmentation of mouse layer 4 somatosensory cortex
Full dense neuron instance segmentation using modified U-Nets and hierarchical agglomeration. Read blog article.